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  "Title": "Analysis of Incubation Data",
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  "Date": "2025-09-11",
  "Authors@R": "person (\"Pablo\", \"Capilla-Lasheras\", email=\"pacapilla@gmail.com\", role=c(\"aut\",\n\"cre\"))",
  "Author": "Pablo Capilla-Lasheras [aut, cre]",
  "Maintainer": "Pablo Capilla-Lasheras <pacapilla@gmail.com>",
  "Description": "Suite of functions to study animal incubation. At the core\nof incR lies an algorithm that allows for the scoring of\nincubation behaviour. Additionally, several functions extract\nbiologically relevant metrics of incubation such as off-bout\nnumber and off-bout duration - for a review of avian incubation\nstudies, see Nests, Eggs, and Incubation: New ideas about avian\nreproduction (2015) edited by D. Charles Deeming and S. James\nReynolds <doi:10.1093/acprof:oso/9780198718666.001.0001>.",
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  "Date/Publication": "2025-09-20 16:51:28 UTC",
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    "User": "root"
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    "author": "PabloCapilla <pacapilla@gmail.com>",
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    "message": "dev version\n",
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    "email": "pacapilla@gmail.com",
    "login": "pablocapilla",
    "bluesky": "@pcapi.bsky.social",
    "description": "Hi there 👋\nI’m Pablo, an evolutionary biologist interested in animal cooperation and how animals adapt to, and are affected by, anthropogenic habitat change.",
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    "type": "user",
    "name": "Pablo Capilla-Lasheras",
    "description": "Hi there 👋\r\nI’m Pablo, an evolutionary biologist interested in animal cooperation and how animals adapt to, and are affected by, anthropogenic habitat change."
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/incR"
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
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    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
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  "_realowner": "pablocapilla",
  "_cranurl": true,
  "_releases": [
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      "date": "2017-07-20"
    },
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      "date": "2017-10-20"
    },
    {
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      "date": "2017-12-11"
    },
    {
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      "date": "2018-03-21"
    },
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      "date": "2023-04-18"
    },
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      "date": "2025-09-17"
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    "incRatt",
    "incRbouts",
    "incRenv",
    "incRenv_old",
    "incRplot",
    "incRprep",
    "incRscan",
    "incRscan_v2",
    "incRscan_v3",
    "incRt"
  ],
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      "name": "incR_envdata",
      "title": "An example data set of environmental temperatures to test the use of 'link{incRenv}'.",
      "object": "incR_envdata",
      "class": [
        "data.frame"
      ],
      "fields": [
        "DATE",
        "env_temperature"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "incR_procdata",
      "title": "An example of incubation temperature time-series after the use of 'incRprep' and 'incRenv'.",
      "object": "incR_procdata",
      "class": [
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      ],
      "fields": [
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        "index",
        "time",
        "hour",
        "minute",
        "second",
        "date",
        "dec_time",
        "temp1",
        "env_temp",
        "incR_score"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "An example of incubation temperature time-series",
      "object": "incR_rawdata",
      "class": [
        "data.frame"
      ],
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      ],
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      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "incR",
      "title": "incR: Analysis of animal incubation",
      "topics": [
        "incR-package",
        "incR"
      ]
    },
    {
      "page": "incR_envdata",
      "title": "An example data set of environmental temperatures to test the use of 'link{incRenv}'.",
      "topics": [
        "incR_envdata"
      ]
    },
    {
      "page": "incR_procdata",
      "title": "An example of incubation temperature time-series after the use of 'incRprep' and 'incRenv'.",
      "topics": [
        "incR_procdata"
      ]
    },
    {
      "page": "incR_rawdata",
      "title": "An example of incubation temperature time-series",
      "topics": [
        "incR_rawdata"
      ]
    },
    {
      "page": "incRact",
      "title": "Calculation of daily first incubation off-bout and last incubation on-bout",
      "topics": [
        "incRact"
      ]
    },
    {
      "page": "incRatt",
      "title": "Calculation of the percentage of daily time spent in nest",
      "topics": [
        "incRatt"
      ]
    },
    {
      "page": "incRbouts",
      "title": "Calculation of the number of daily on- and off-bouts",
      "topics": [
        "incRbouts"
      ]
    },
    {
      "page": "incRenv",
      "title": "Matching environmental and nest temperatures",
      "topics": [
        "incRenv"
      ]
    },
    {
      "page": "incRenv_old",
      "title": "Matching environmental and nest temperatures - Old version",
      "topics": [
        "incRenv_old"
      ]
    },
    {
      "page": "incRplot",
      "title": "Quick visualisation of incubation temperatures, on-bouts and off-bouts",
      "topics": [
        "incRplot"
      ]
    },
    {
      "page": "incRprep",
      "title": "Data preparation for incubation analysis in incR",
      "topics": [
        "incRprep"
      ]
    },
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      "title": "Automated scoring of incubation",
      "topics": [
        "incRscan"
      ]
    },
    {
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      "topics": [
        "incRscan_v2"
      ]
    },
    {
      "page": "incRscan_v3",
      "title": "Scoring of incubation based on combination of dynamic (as in 'incRscan') and fixed temperature thresholds (as in 'incRscan_v2'",
      "topics": [
        "incRscan_v3"
      ]
    },
    {
      "page": "incRt",
      "title": "Calculation of temperature average and variance for customised time windows",
      "topics": [
        "incRt"
      ]
    }
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    "withr"
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        "incR working pipeline",
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        "Combining nest and environmental temperatures: incRenv",
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        "Incubation constancy",
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      "created": "2017-07-20 09:50:26",
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